If your software requires a different topology format (like GROMACS .top ), use tools like vmd or parmed to convert the extracted PSF.
Load the PSF into VMD first, then load the coordinate file on top of it to correctly display bonds and representations. psf.rar
In a NAMD configuration file, point to the extracted file: structure input.psf . If your software requires a different topology format
A list of every atom in the system, including its unique ID, segment name, residue name, and atom type. A list of every atom in the system,
Used to maintain planarity (e.g., in aromatic rings). 4. Usage Instructions To utilize the contents of psf.rar , follow these steps: Extraction:
Explicit values for each atom's mass and partial charge, used by the force field to calculate physical interactions. Connectivity Tables: Bonds: Explicit pairs of atoms that are chemically bonded. Angles: Triplets of atoms forming specific bond angles.